Marine aquaculture in semi-enclosed bays can significantly influence nutrient cycling in coastal ecosystems.However,the impact of marine aquaculture on the dynamics of dissim-ilatory nitrate reduction processes(DNRPs)and the fate of reactive nitrogen remain poorly understood.In this study,the rates of DNRPs and the abundances of related functional genes were investigated in aquaculture and non-aquaculture areas.The results showed that ma-rine aquaculture significantly increased the denitrification(DNF)and dissimilatory nitrate reduction to ammonium(DNRA)rates and decreased the rate of anaerobic ammonium ox-idation(ANA),as compared with non-aquaculture sites.DNF was the dominant pathway contributing to the total nitrate reduction,and its contribution to the total nitrate reduction significantly increased from 66.72%at non-aquaculture sites to 78.50%at aquaculture sites.Marine aquaculture can significantly affect the physicochemical characteristics of sediment and the abundances of related functional genes,leading to variations in the nitrate reduc-tion rates.Although nitrate removal rates increased in the marine aquaculture area,am-monification rates and the nitrogen retention index in the aquaculture areas were 2.19 and 1.24 times,respectively,higher than those at non-aquaculture sites.Net reactive nitrogen retention exceeded nitrogen removal in the aquaculture area,and the retained reactive ni-trogen could diffuse with the tidal current to the entire bay,thereby aggravating N pollution in the entire study area.These results show that marine aquaculture is the dominant source of nitrogen pollution in semi-enclosed bays.This study can provide insights into nitrogen pollution control in semi-enclosed bays with well-developed marine aquaculture.