The effect of divalent cation substitution on the structure and magnetic properties of La1.2Sr1.8-xCaxMn2O7 (x = 0-0.900) is investigated in this paper. Partly replacing divalent cation Sr2+ by Ca2+ ions results in the weakening and then disappearance of long-range ferromagnetic ordering, and the formation of spin canting and low-temperature spin-glass. Based on structural analysis by Rietveld profile fitting, we suggest that this variation of magnetic property be related to a Jahn-Teller-type lattice distortion of MnO6 octahedra due to the introduction of the smaller sized Ca2+ions.