A square hole array is fabricated over a micro-bridge of NbN thin film by electron beam lithography and reactiveion milling.Magneto-resistance is measured across the micro-bridge filled with a hole array near the superconductingtransition temperature.It is found that magneto-resistance minima occur when the number of vortices is an integermultiple or a fractional multiple of the number of holes.The temperature and the current dependences of the matchingeffect are studied.