Accelerating electron tomography reconstruction algorithm ICON with GPU

• 来源期刊: 生物物理学报
• 年，卷（期）: 2017,（1）
• 页码范围: 36-42
• 页数: 7页
• 语种: 中文
• DOI: 10.1007/s41048-017-0041-z

摘要

Electron tomography (ET) plays an important role in studying in situ cell ultrastructure in threedimensional space.Due to limited tilt angles,ET reconstruction always suffers from the "missing wedge" problem.With a validation procedure,iterative compressed-sensing optimized NUFFT reconstruction (ICON) demonstrates its power in the restoration of validated missing information for low SNR biological ET dataset.However,the huge computational demand has become a major problem for the application of ICON.In this work,we analyzed the framework of ICON and classified the operations of major steps of ICON reconstruction into three types.Accordingly,we designed parallel strategies and implemented them on graphics processing units (GPU) to generate a parallel program ICON-GPU.With high accuracy,ICON-GPU has a great acceleration compared to its CPU version,up to 83.7×,greatly relieving ICON's dependence on computing resource.