Quantitative Analysis of Pathway Enrichment within Faba Bean Seeds RNA-Seq (<i>Vicia faba</i>L)

• 作者: Jeffrey G. Paull Jiang Li Nuredin Habili Qi Wu Shi Y. Yang Yunjie Wang
• 来源期刊: 美国植物学期刊(英文)
• 学科: 农学
• 关键词: RNA-SEQ (Quantification) Faba Bean (Vicia faba) Seed PATHWAY ENRICHMENT Quantitative Analysis
• 年，卷（期）: 2019,（12）
• 页码范围: 2305-2334
• 页数: 30页
• 分类号: S51

摘要

Faba bean (Vicia faba L) seeds are an important source of plant protein for humans and animals. A total of 15,697 Differentially Expressed Genes (DEGs) with pathway annotation were discovered in RNA-Seq of the faba bean seeds. A total of 75 significant KEGG pathways abundance were discovered and 9 pathways were conserved within all genotypes. 41 significant pathways were found to be partially conserved within comparisons of 2 to 6 pairs of genotypes and 25 significant pathways were unique to single pairs of genotypes. There were 8 specific significant pathways discovered related to the faba bean seed Hydration Capacity trait and 9 specific significant pathways discovered related to the PSbMV seeds staining trait. The DEGs demonstrated the genetic distance between these varieties was confirmed by the breeding pedigree selection information and a PCA graph clearly illustrated the genetic distance within these genotypes.